I’m a Bioinformatician and Research Software Engineer at WEHI working in the area of sequencing bioinformatics and spatial omics. I build robust software to accelerate research outcomes.
WEHI’s Spatial Omics Data Analytics (SODA) Hub: An environment for spatial analysis from data generation to analysis and beyond | WEHI Spatial Technology Symposium, 2025, Melbourne
Seqera Platform in the WEHI Advanced Genomics Facility | The Australian Nextflow Seqera Service launch - ABACBS National Seminar Series, 2024, virtual
watch
Using equivalance classes for differential transcript usage and variant detection in RNA-seq data | Australian Bioinformatics And Computational Biology Society (ABACBS) Conference 2020, virtual watch | slides
MINTIE: identifying cryptic variants in cancer transcriptomes using RNA-seq data | Victorian Cancer Bioinformatics Symposium 2019, Melbourne slides
SVclone: inferring structural variant cancer cell fraction | Machine Learning in Genome Biology Conference 2019, Kiama
Neo-adjuvant treatment resistance in aggressive prostate cancer is driven by non-genomic mechanisms | New Frontiers in Cancer Research Post Doc Symposium 2018, Melbourne
SVclone: inference of cancer cell fraction using structural variation | Australian Bioinformatics And Computational Biology Society (ABACBS) Conference 2017, Adelaide slides | Awarded oral presentation runner-up prize
Investigating the evolution of structural variation in cancer | PhD Completion Seminar 2017, Walter + Eliza Hall Institute watch | slides
SVclone: A Dirichlet Process clustering approach for investigating the evolution of genome structure in cancer | Data61 and Australian National University, Canberra 2016 (guest presentation)
Investigating intra-tumour heterogeneity of prostate cancer using structural variation | Australian National University, Canberra 2016 (guest presentation)
Reconstructing the evolution of cancer cell populations – methods & challenges |
VLSCI LSCC NGS Informatics Meeting, Melbourne 2014
How we became bioinformaticians: the student experience(with Andrew Lonsdale & Harriet Dashnow) |
International Conference on Bioinformatics (INCOB) 2014, Sydney
My experience with the Master of Science (Bioinformatics) course(to prospective students) |
Graduate School of Science Information Session 2013, Melbourne University
Integrated genomic analysis of structural rearrangements in hormone-driven cancers |
COMBINE Student Symposium 2013, Melbourne
Diagnostic Genomics for Prostate Cancer(to general audience) | National ICT Australia Technology Showcase 2013, Albury-Wodonga
WEHI’s SODA-Hub provides an end-to-end analysis environment for spatial omics from data ingestion to cell segmentation(poster) | Australian Bioinformatics and Computational Biology Society (ABACBS) Conference, 2025, Adelaide poster
Ultra-accurate detection of rare mutations using duplex sequencing(poster) | Australian Bioinformatics and Computational Biology Society (ABACBS) Conference, 2022, Melbourne poster
MINTIE: identifying novel structural and splice variants in cancer transcriptomes using RNA-seq data(virtual poster) | Victorian Cancer Bioinformatics Symposium 2020, Melbourne watch | poster
MINTIE: identifying cryptic variants in cancer transcriptomes using RNA-seq data(lightning talk & poster) | Australasian Genomic Technologies Association (AGTA) Conference 2019, Melbourne
SVclone: inference of cancer cell fraction using structural variation(lightning talk & poster) | Australian Prostate Cancer Conference 2017, Melbourne poster | Received poster presentation award
SVclone: inference of cancer cell fraction using structural variation(lightning talk & poster) | Lorne Cancer Conference 2017
SVclone: inference of cancer cell fraction using structural variation | Evolutionary Biology and Ecology of Cancer Summer School 2016, Hinxton UK
Investigating intra-tumour heterogeneity of prostate cancer using structural variation |
Lorne Genome 2016
Investigating intra-tumour heterogeneity of prostate cancers using structural variation(lightning talk & poster) | ISMB/ECCB 2015, Dublin Ireland poster
Using structural variations for phylogenetic reconstruction of tumour evolution | Lorne Cancer 2015 (also presented at INCOB 2014 Sydney and ABiC Melbourne 2014) poster
